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Commits on Sep 16, 2025

• Update README.md

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  emvcaest

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Commits on Feb 6, 2025

• Merge pull request #12 from CobiontID/conda

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  gq1

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  4abf6ff

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• update readme

  gq1

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  3dd394a

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• wrong default branch name

  gq1

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  bbd7381

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Commits on Feb 5, 2025

• update workflow to build Docker from current checkout

  gq1

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  dec1b39

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• Remove conda defaults channel and add python 3.9 for hifiasm env

  gq1

  committed
  26536fc

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• update workflow to build Docker image

  gq1

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  ea41b88

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• use miniforge to install snakemake

  gq1

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Commits on Jan 29, 2025

• Merge pull request #11 from muffato/main

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  gq1

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Commits on Jul 11, 2024

• Added a licence

  muffato

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Commits on Feb 26, 2024

• Change outputname hifiasm run gfa

  emvcaest

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Commits on Feb 20, 2024

• Update hifiasm version

  emvcaest

  committed
  715ce37

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• Update hifiasm version

  emvcaest

  committed
  d8a13a9

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Commits on Feb 19, 2024

• Update hifiasm version

  emvcaest

  committed
  f4a88f4

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• Change minimap settings map-pb to map-hifi

  emvcaest

  committed
  e78589c

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Commits on Feb 27, 2023

• Gzip fasta + datestamp silva + busco reads

  emvcaest

  committed
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Commits on Feb 23, 2023

• Bug start NCBI taxonomy download

  emvcaest

  committed
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Commits on Feb 17, 2023

• bug silva download

  emvcaest

  committed
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Commits on Feb 14, 2023

• gzip kraken.tax.masked.ffn

  emvcaest

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• bugfix #2 assembly read count

  emvcaest

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  1843418

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Commits on Feb 13, 2023

• bugfix mapped reads

  emvcaest

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  3125900

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• Calculate reads mapping re-assembly

  emvcaest

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  ca629b6

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• Remove circos step from pipeline

  emvcaest

  committed
  7e4f413

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Commits on Feb 9, 2023

• Replace ProkSSU by SSU in filename

  emvcaest

  committed
  7506424

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• bug fixes - renaming putative

  emvcaest

  committed
  3bb471f

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Commits on Feb 8, 2023

• Threads_max & rename putative files

  emvcaest

  committed
  8dfb6b5

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• Update README.md

  emvcaest

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  3a88ae3

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• Update README.md

  emvcaest

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  a1f95b4

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• Update README.md

  emvcaest

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  a257341

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• Update README.md

  emvcaest

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  ad770e1

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Commits on Feb 6, 2023

• fix bug busco summary

  emvcaest

  committed
  ce64ae8

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• update ubuntu

  emvcaest

  committed
  f144ea0

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• update ubuntu

  emvcaest

  committed
  c5d6ce0

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• Retain busco summary file & no limit re-assembly

  emvcaest

  committed
  ce50c13

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Commits on Feb 1, 2023

• Reduce config yaml by usage workflow.basedir

  emvcaest

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