From dbeab48d85b4ce03a7585256e37e3cef837c87e1 Mon Sep 17 00:00:00 2001 From: BillionClaw Date: Sun, 19 Apr 2026 11:31:30 +0800 Subject: [PATCH 1/3] fix(lint): use correct config key zenodo_release instead of zenodo_doi --- nf_core/pipelines/lint/readme.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nf_core/pipelines/lint/readme.py b/nf_core/pipelines/lint/readme.py index 67eb49f957..387fea6f50 100644 --- a/nf_core/pipelines/lint/readme.py +++ b/nf_core/pipelines/lint/readme.py @@ -85,7 +85,7 @@ def readme(self): else: warned.append("README did not have an nf-core template version badge.") - if "zenodo_doi" not in ignore_configs: + if "zenodo_release" not in ignore_configs: # Check that zenodo.XXXXXXX has been replaced with the zendo.DOI zenodo_re = r"/zenodo\.X+" match = re.search(zenodo_re, content) From e90ae6533b4ad11c1441b49b486bf22bfc08a552 Mon Sep 17 00:00:00 2001 From: mashehu Date: Mon, 27 Apr 2026 10:59:39 +0200 Subject: [PATCH 2/3] use `zenodo_doi` instead of `zenodo_release` --- nf_core/pipelines/lint/readme.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/nf_core/pipelines/lint/readme.py b/nf_core/pipelines/lint/readme.py index 387fea6f50..57a3dfa3a2 100644 --- a/nf_core/pipelines/lint/readme.py +++ b/nf_core/pipelines/lint/readme.py @@ -38,7 +38,7 @@ def readme(self): readme: - nextflow_badge - nfcore_template_badge - - zenodo_release + - zenodo_doi """ passed = [] @@ -85,7 +85,7 @@ def readme(self): else: warned.append("README did not have an nf-core template version badge.") - if "zenodo_release" not in ignore_configs: + if "zenodo_doi" not in ignore_configs: # Check that zenodo.XXXXXXX has been replaced with the zendo.DOI zenodo_re = r"/zenodo\.X+" match = re.search(zenodo_re, content) From be65a6c63a9c610cf18ffef5dbbf914dcdf0775e Mon Sep 17 00:00:00 2001 From: nf-core-bot Date: Mon, 27 Apr 2026 11:59:22 +0000 Subject: [PATCH 3/3] [automated] Update CHANGELOG.md --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 079a7f660f..53c2f32c36 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -92,6 +92,7 @@ - Fix changelog bot failing after linting step ([#4155](https://github.com/nf-core/tools/pull/4155)) - lint for correct syntax for compressed files in stubs ([#4048](https://github.com/nf-core/tools/pull/4048)) - fix linting with missing input ([#4202](https://github.com/nf-core/tools/pull/4202)) +- fix(lint): use correct config key zenodo_doi ([#4201](https://github.com/nf-core/tools/pull/4201)) ### Modules