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JasonJiangs/README.md

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I am a first-year PhD student in the Computational Biology and Bioinformatics (CBB) program at the University of Southern California. My research lies at the intersection of AI and biology, where I design computational approaches to accelerate discoveries in synthetic biology, drug discovery, and molecular interaction.

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  1. AIDD-LiLab/SMARTBind AIDD-LiLab/SMARTBind Public

    Small Molecule Approach to RNA Targeting Binder Discovery (SMARTBind) Using Deep Learning Without Structural Input

    Jupyter Notebook 10 2

  2. cellethology/GLM-Nullsette-Benchmark cellethology/GLM-Nullsette-Benchmark Public

    This is the repository for benchmarking genomic language model on Nullsettes.

    Python 3

  3. aristoteleo/tabula aristoteleo/tabula Public

    Single cell foundation model with federated tabular learning

    Jupyter Notebook 29 4

  4. OmicsML/awesome-foundation-model-single-cell-papers OmicsML/awesome-foundation-model-single-cell-papers Public

    437 45

  5. SophieSarceau/SequenceDisplay-ML SophieSarceau/SequenceDisplay-ML Public

    [Nature Biotechnology] Sequence Display enables large-scale sequence–activity datasets for rapid protein evolution

    Python 9

  6. zanglab/SICER2 zanglab/SICER2 Public

    Python 25 16