Stars
Software that can generate photos from paintings, turn horses into zebras, perform style transfer, and more.
Implementation of "GANs for Biological Image Synthesis"
Napari plugin to ease manual correction of epithelial movie segmentation
A differentiable JAX-based framework for vertex modeling and inverse design of epithelial tissues
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
PhysiBoSS / PhysiBoSS
Forked from MathCancer/PhysiCellPhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
TrackMate is your buddy for your everyday tracking.
ngio is a Python library to streamline OME-Zarr image analysis workflows.
Reference implementation of the Graph Exchange File Format
A template repo used to make new napari plugins
Utilities for computing common accuracy metrics on cell tracking solutions with ground truth
A simple automated feedback microscopy tool for live tracking of moving samples.
Poetry plugin that updates dependencies and bumps their versions in pyproject.toml file
CHIC (Communication Human Imagination Creativity) Advertising
Single cell resolution 3D imaging and segmentation within intact live tissues
Software for Caenorhabditis elegans length determination
Public repo for rbio, a biologically-informed reasoning model trained on virtual cell models as verifiers
Re-stained whole slide image alignment
Matlab code for publication: Integrins coordinate basal surface contraction and oriented cell growth to enable thickening of a curved epithelium
A tissue stress and cell pressure inference package with dynamical information
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