Commits

Breadcrumbs

History for

onminimap2-yaml-issue

User selector

All users

All time

Commit History

Commits on Feb 27, 2026

• Try removing ifEmpty on ALE mixing

  jfy133

  committed
  a6d77dd

  Copy full SHA for a6d77dd

Commits on Jan 22, 2026

• Address review comments

  dialvarezs

  committed
  136bf63

  Copy full SHA for 136bf63

Commits on Jan 21, 2026

• Simplify condition to filter short read assemblies

  dialvarezs

  committed
  e977359

  Copy full SHA for e977359

• Update ALE usage docs

  dialvarezs

  committed
  53dfcd8

  Copy full SHA for 53dfcd8

• Merge remote-tracking branch 'upstream/dev' into ale_module

  dialvarezs

  committed
  5c61ba6

  Copy full SHA for 5c61ba6

Commits on Jan 15, 2026

• Update workflows/mag.nf

  Show description for 5b81306
  

  jfy133

  and

  prototaxites

  authored
  5b81306

  Copy full SHA for 5b81306

• update subworkflow to take in the new file

  jfy133

  committed
  4b2ebc8

  Copy full SHA for 4b2ebc8

Commits on Jan 9, 2026

• Merge branch '964-generate-contig-to-bin-maps-for-all-bins-during-binning-and-simplify-code' into merge-binqc-pydamage-2

  jfy133

  committed
  863e635

  Copy full SHA for 863e635

• Merge branch '964-generate-contig-to-bin-maps-for-all-bins-during-binning-and-simplify-code' of github.com:nf-core/mag into 964-generate-contig-to-bin-maps-for-all-bins-during-binning-and-simplify-…

  Show description for dd2665e
  jfy133

  committed
  dd2665e

  Copy full SHA for dd2665e

• Update snapshot

  jfy133

  committed
  1a65f63

  Copy full SHA for 1a65f63

• [automated] Fix code linting

  nf-core-bot

  committed
  05f118c

  Copy full SHA for 05f118c

• Move contig to bin map to outside of binning subworkflow to support inclusion of refined bins

  jfy133

  committed
  0d50a91

  Copy full SHA for 0d50a91

Commits on Jan 7, 2026

• Merge branch 'dev' into merge-binqc-pydamage-2

  jfy133

  authored
  f9c162f

  Copy full SHA for f9c162f

• Update tests and improve docs

  jfy133

  committed
  87a8e1a

  Copy full SHA for 87a8e1a

Commits on Jan 6, 2026

• Get basic scripts working

  jfy133

  committed
  c0285a1

  Copy full SHA for c0285a1

Commits on Dec 8, 2025

• updated schema and enable ale in test.config

  PetcuBogdan

  committed
  f7131b2

  Copy full SHA for f7131b2

Commits on Dec 6, 2025

• Merge branch 'nf-core:main' into ale_module

  PetcuBogdan

  authored
  ab6e7c8

  Copy full SHA for ab6e7c8

Commits on Dec 3, 2025

• Fix param names, add additional warning

  dialvarezs

  committed
  657493c

  Copy full SHA for 657493c

• Add verifications to ensure that GTDB-Tk is only run when bin QC is enabled

  dialvarezs

  committed
  09db8a9

  Copy full SHA for 09db8a9

Commits on Dec 2, 2025

• run BINNING_PREPARATION for ale

  PetcuBogdan

  committed
  5767e89

  Copy full SHA for 5767e89

Commits on Dec 1, 2025

• Style

  dialvarezs

  committed
  f7dd196

  Copy full SHA for f7dd196

• Address #948 review comments

  dialvarezs

  committed
  f2fdb8c

  Copy full SHA for f2fdb8c

• Merge pull request #861 from jeffe107/dev

  Show description for 06c5ab7
  jeffe107

  authored
  06c5ab7

  Copy full SHA for 06c5ab7

Commits on Nov 28, 2025

• Merge branch 'dev' into dev-jeffe107

  dialvarezs

  committed
  bfb0e37

  Copy full SHA for bfb0e37

• Add summarise pydamage bins module and store making script

  jfy133

  committed
  69c35e6

  Copy full SHA for 69c35e6

• Merge branch 'dev' into fix-busco-concat

  dialvarezs

  authored
  019f34c

  Copy full SHA for 019f34c

Commits on Nov 27, 2025

• Skip mixing of GTDB-Tk files when binning is skipped

  dialvarezs

  committed
  1beb229

  Copy full SHA for 1beb229

• Fix busc report concat

  dialvarezs

  committed
  49b4b9e

  Copy full SHA for 49b4b9e

• Update workflows/mag.nf

  Show description for fa84fcf
  

  jeffe107

  and

  jfy133

  authored
  fa84fcf

  Copy full SHA for fa84fcf

Commits on Nov 24, 2025

• fix small problems

  PetcuBogdan

  committed
  1c71558

  Copy full SHA for 1c71558

Commits on Nov 21, 2025

• Merge branch 'dev' into dev

  jfy133

  authored
  2ce8180

  Copy full SHA for 2ce8180

• BIgMAG compatibility

  jeffe107

  committed
  658f63f

  Copy full SHA for 658f63f

Commits on Nov 20, 2025

• Merge branch 'dev' into nf-core-template-merge-3.5.1

  dialvarezs

  committed
  a3cd610

  Copy full SHA for a3cd610

• Template update for nf-core/tools version 3.5.1

  nf-core-bot

  committed
  00447d0

  Copy full SHA for 00447d0

Commits on Nov 16, 2025

• Change deprecated Channel by channel and use explicit params in closures

  dialvarezs

  committed
  8b1e7fd

  Copy full SHA for 8b1e7fd