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Commits on Feb 2, 2026

• Bump verswion post 5.4

  jfy133

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Commits on Jan 26, 2026

• Version bump for release

  jfy133

  committed
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Commits on Dec 5, 2025

• Post release bump

  dialvarezs

  committed
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Commits on Dec 3, 2025

• Support assembly input + long reads

  dialvarezs

  committed
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Commits on Dec 1, 2025

• Bump version

  dialvarezs

  committed
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Commits on Nov 7, 2025

• Post release version bump

  dialvarezs

  committed
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Commits on Nov 4, 2025

• Bump version

  dialvarezs

  committed
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Commits on Oct 27, 2025

• Post release version bump

  jfy133

  committed
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Commits on Oct 24, 2025

• Version bump for 5.1.0 release

  jfy133

  committed
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Commits on Sep 30, 2025

• feat: post-release version bump

  prototaxites

  committed
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Commits on Sep 17, 2025

• [automated] Fix code linting

  nf-core-bot

  committed
  102bf1d

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• Update metromap, deprecate old diagram, use metromap in README

  jfy133

  committed
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Commits on Aug 6, 2025

• Merge branch 'dev' into multiqc-config_update

  harper357

  authored
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• [automated] Fix code linting

  nf-core-bot

  committed
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Commits on Jul 31, 2025

• sync table columns with MultiQC modules

  harper357

  committed
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Commits on Jul 28, 2025

• adding hidden columns to general stats

  harper357

  committed
  8604d2b

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• remove TODOs

  harper357

  committed
  a98975a

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• fix module name

  harper357

  committed
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Commits on Jul 26, 2025

• added TODO comments

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  harper357

  committed
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• added minimum required changes

  harper357

  committed
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Commits on Jun 10, 2025

• Remove kraken2, centrifuge and krona usage and references

  dialvarezs

  committed
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Commits on May 28, 2025

• Merge branch 'dev' into longread_only

  jfy133

  authored
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Commits on May 27, 2025

• [automated] Fix code linting

  nf-core-bot

  committed
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• Post 4.0.0 version bump

  jfy133

  committed
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Commits on May 26, 2025

• remove error messages for read platforms in the input schema

  muabnezor

  committed
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Commits on May 15, 2025

• Split PACBIO longread platform into PACBIO_CLR and PACBIO_HIFI, set downstream options for minimap2, and flye thereafter

  muabnezor

  committed
  1f4eb9c

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• Merge branch 'dev' into longread_only

  jfy133

  authored
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Commits on May 14, 2025

• [automated] Fix code linting

  nf-core-bot

  committed
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• Bump version using nf-core/tools

  jfy133

  committed
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Commits on May 12, 2025

• Merge branch 'dev' into longread_only

  jfy133

  authored
  a0124dc

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• Left over references to master

  jfy133

  committed
  77e9a75

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• Merge branch 'TEMPLATE' into default-branch-change

  jfy133

  committed
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• Template update for nf-core/tools version 3.2.0

  jfy133

  committed
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Commits on Apr 29, 2025

• Enforce Sequencing platforms in the samplesheet

  muabnezor

  committed
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Commits on Apr 28, 2025

• Merge branch 'dev' into longread_only

  muabnezor

  authored
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