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Commits on Jan 16, 2026

• Replace underscores with hyphens in python argument names

  jfy133

  committed
  9ab8d3f

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• Apply suggestions from code review

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  jfy133

  and

  dialvarezs

  authored
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Commits on Jan 15, 2026

• Fix script so that it is compatible with the new contig2binmap file

  jfy133

  committed
  779cc70

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Commits on Jan 7, 2026

• Merge branch 'dev' into merge-binqc-pydamage-2

  jfy133

  authored
  f9c162f

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• Save 'raw' files of the reordered contigs per bin

  jfy133

  committed
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Commits on Jan 6, 2026

• Get basic scripts working

  jfy133

  committed
  c0285a1

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Commits on Dec 1, 2025

• Address #948 review comments

  dialvarezs

  committed
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Commits on Nov 28, 2025

• Add summarise pydamage bins module and store making script

  jfy133

  committed
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Commits on Nov 21, 2025

• Merge branch 'dev' into dev

  jfy133

  authored
  2ce8180

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• BIgMAG compatibility

  jeffe107

  committed
  658f63f

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Commits on Nov 13, 2025

• [automated] Fix code linting

  nf-core-bot

  committed
  3dba89e

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• fix(domain_classification): remove assembler arg from script

  prototaxites

  authored
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Commits on Nov 7, 2025

• Merge branch 'dev' into dev

  jfy133

  authored
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Commits on Nov 4, 2025

• Merge remote-tracking branch 'upstream/dev' into add-MetaBinner

  dialvarezs

  committed
  96da27f

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• Fix ordering

  dialvarezs

  committed
  83a108c

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• merge upstream dev

  d4straub

  committed
  33f87a5

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• Update bin/get_mag_depths.py

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  dialvarezs

  and

  jfy133

  authored
  c5fd6b9

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• Update get_mag_depths.py to ensure column ordering

  dialvarezs

  committed
  c9b49d3

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Commits on Nov 3, 2025

• Merge branch 'dev' into dev

  jfy133

  authored
  07a0f3e

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• [automated] Fix code linting

  nf-core-bot

  committed
  587cfce

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• apply suggestions from code review

  d4straub

  committed
  17fd583

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• Apply suggestion from @dialvarezs

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  d4straub

  and

  dialvarezs

  authored
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Commits on Oct 23, 2025

• ignore metabinner error 1 and 255 and add acknowledgment

  d4straub

  committed
  6f98ee2

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Commits on Oct 22, 2025

• adjust metabinner bin file names again

  d4straub

  committed
  9e4a2cd

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• adjust metabinner bin filenames

  d4straub

  committed
  948c3a1

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• update metabinner output

  d4straub

  committed
  8230584

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Commits on Oct 17, 2025

• add script to bin

  d4straub

  committed
  6665f6e

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Commits on Oct 15, 2025

• Use correct variable name for renaming GTDBTK results

  jfy133

  committed
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Commits on Oct 14, 2025

• Add suffixes, improve changelog and update output.md to better describe the output file.

  jfy133

  committed
  f14f167

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• update combine_tables.py to merge all files

  jfy133

  committed
  3b8068f

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• Update binQC to export BUSCO, CheckM, and CheckM2 summaries separately and allow binqc to execute (but currnetly does not merge!)

  jfy133

  committed
  1c84de1

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Commits on Oct 7, 2025

• added TODOs so i don't forget any

  harper357

  committed
  a09c114

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Commits on Sep 17, 2025

• Update bigmag_summary.py

  jeffe107

  authored
  38e48b2

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• [automated] Fix code linting

  nf-core-bot

  committed
  5e430e3

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Commits on Sep 16, 2025

• BIgMAG compatibility

  jeffe107

  committed
  105a51b

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