Commits

Breadcrumbs

History for

onminimap2-yaml-issue

User selector

All users

All time

Commit History

Commits on Mar 4, 2026

• Fix minimap2 host align output path

  dialvarezs

  committed
  0cf49b9

  Copy full SHA for 0cf49b9

Commits on Feb 2, 2026

• Add longer singularity pullTimeout for DasTool

  jfy133

  committed
  cbd52c3

  Copy full SHA for cbd52c3

Commits on Jan 22, 2026

• Address review comments

  dialvarezs

  committed
  136bf63

  Copy full SHA for 136bf63

• Remove repeated comment

  dialvarezs

  committed
  191b07f

  Copy full SHA for 191b07f

Commits on Jan 21, 2026

• Remove ALE publish unneeded pattern

  dialvarezs

  committed
  0d2e94e

  Copy full SHA for 0d2e94e

• Update ALE usage docs

  dialvarezs

  committed
  53dfcd8

  Copy full SHA for 53dfcd8

• Merge remote-tracking branch 'upstream/dev' into ale_module

  dialvarezs

  committed
  5c61ba6

  Copy full SHA for 5c61ba6

Commits on Jan 13, 2026

• Skip SEmiBin2 due to variability in runs

  jfy133

  committed
  49c7268

  Copy full SHA for 49c7268

Commits on Jan 9, 2026

• Merge branch '964-generate-contig-to-bin-maps-for-all-bins-during-binning-and-simplify-code' into merge-binqc-pydamage-2

  jfy133

  committed
  863e635

  Copy full SHA for 863e635

• Add support for contig2bin map generation immediately after binning

  jfy133

  committed
  fbbdd33

  Copy full SHA for fbbdd33

Commits on Jan 7, 2026

• Revert "Specify Checkm2 download with user agent to wget to avoid 403 errors with Zenodo (props to @dialvarezs for fix)"

  Show description for dab8325
  jfy133

  committed
  dab8325

  Copy full SHA for dab8325

• Specify Checkm2 download with user agent to wget to avoid 403 errors with Zenodo (props to @dialvarezs for fix)

  jfy133

  committed
  b59884f

  Copy full SHA for b59884f

• Merge branch 'dev' into merge-binqc-pydamage-2

  jfy133

  authored
  f9c162f

  Copy full SHA for f9c162f

• Save 'raw' files of the reordered contigs per bin

  jfy133

  committed
  9b4af4e

  Copy full SHA for 9b4af4e

Commits on Dec 8, 2025

• updated schema and enable ale in test.config

  PetcuBogdan

  committed
  f7131b2

  Copy full SHA for f7131b2

Commits on Dec 6, 2025

• exclude ale from the tests with test data

  PetcuBogdan

  committed
  91dc3f7

  Copy full SHA for 91dc3f7

• Merge branch 'nf-core:main' into ale_module

  PetcuBogdan

  authored
  ab6e7c8

  Copy full SHA for ab6e7c8

Commits on Dec 3, 2025

• METASPAdes error 250 (OOM) triggers retry rather than finish

  AlexHoratio

  authored
  9003119

  Copy full SHA for 9003119

Commits on Dec 1, 2025

• Update comment about BIgMAG

  dialvarezs

  committed
  2852171

  Copy full SHA for 2852171

• Address #948 review comments

  dialvarezs

  committed
  f2fdb8c

  Copy full SHA for f2fdb8c

• Merge pull request #861 from jeffe107/dev

  Show description for 06c5ab7
  jeffe107

  authored
  06c5ab7

  Copy full SHA for 06c5ab7

Commits on Nov 28, 2025

• Merge branch 'dev' into dev-jeffe107

  dialvarezs

  committed
  bfb0e37

  Copy full SHA for bfb0e37

• Update test_assembly_input.config

  jeffe107

  authored
  97840fd

  Copy full SHA for 97840fd

Commits on Nov 27, 2025

• Fix busc report concat

  dialvarezs

  committed
  49b4b9e

  Copy full SHA for 49b4b9e

Commits on Nov 24, 2025

• fix small problems

  PetcuBogdan

  committed
  1c71558

  Copy full SHA for 1c71558

Commits on Nov 21, 2025

• Merge branch 'dev' into dev

  jfy133

  authored
  2ce8180

  Copy full SHA for 2ce8180

• BIgMAG compatibility

  jeffe107

  committed
  658f63f

  Copy full SHA for 658f63f

Commits on Nov 20, 2025

• Update snapshot

  dialvarezs

  committed
  f55b9af

  Copy full SHA for f55b9af

Commits on Nov 19, 2025

• Merge pull request #930 from d4straub/add-semibin

  Show description for 142342b
  d4straub

  authored
  142342b

  Copy full SHA for 142342b

Commits on Nov 18, 2025

• Merge pull request #933 from dialvarezs/increase-checkm2-download-connections

  Show description for 8588892
  jfy133

  authored
  8588892

  Copy full SHA for 8588892

• skip tests with long reads and too less contigs

  d4straub

  committed
  5af5bf2

  Copy full SHA for 5af5bf2

• correct assembly type handling: short or long reads

  d4straub

  committed
  fa19a43

  Copy full SHA for fa19a43

• Merge branch 'dev' of https://github.com/nf-core/mag into add-semibin

  d4straub

  committed
  ed42a1b

  Copy full SHA for ed42a1b

• skip semibin2 in profile test_single_end

  d4straub

  committed
  c34b1dd

  Copy full SHA for c34b1dd

• skip semibin2 in profile test_alternatives

  d4straub

  committed
  5fb9001

  Copy full SHA for 5fb9001