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Commits on Mar 5, 2026

• Merge branch 'dev' into issue-985

  vinisalazar

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• Merge branch 'dev' into issue-985

  dialvarezs

  committed
  defe8af

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• Update docs re: long_reads_platform

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  vinisalazar

  committed
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Commits on Mar 4, 2026

• Fix typos

  dialvarezs

  committed
  c5732a9

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• Update resources and custom tool args docs to make them related to mag

  dialvarezs

  committed
  4c81383

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• Update GTDB docs to match current default (r226)

  dialvarezs

  committed
  b7de254

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• Fix pydamage and adna variants outputs

  dialvarezs

  committed
  04dcdd5

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• Remove raw read taxonomic classification from output overview

  dialvarezs

  committed
  2c88841

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• Fix output paths

  dialvarezs

  committed
  d7161b7

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• Fix skip_ancient_damagecorrection parameter

  dialvarezs

  committed
  822a020

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• Fix run_checkm parameter

  dialvarezs

  committed
  9c00d80

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• Fix naming of save_checkm_data parameter

  dialvarezs

  committed
  e3c07a2

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• Fix naming of bin_*_size parameters

  dialvarezs

  committed
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Commits on Mar 2, 2026

• docs: update GTDB-Tk parameter docs to reflect all bin QC tools

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  claude

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Commits on Jan 26, 2026

• Version bump for release

  jfy133

  committed
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Commits on Jan 22, 2026

• Remove log from output (not published)

  dialvarezs

  committed
  3389da7

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Commits on Jan 21, 2026

• Update ALE output docs

  dialvarezs

  committed
  40af018

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• Update ALE usage docs

  dialvarezs

  committed
  53dfcd8

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• Merge remote-tracking branch 'upstream/dev' into ale_module

  dialvarezs

  committed
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Commits on Jan 15, 2026

• Improve docs and make stronger warning about pyDamage and

  jfy133

  committed
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Commits on Jan 9, 2026

• Merge branch '964-generate-contig-to-bin-maps-for-all-bins-during-binning-and-simplify-code' into merge-binqc-pydamage-2

  jfy133

  committed
  863e635

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• update docs

  jfy133

  committed
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• Apply suggestions from code review

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  d4straub

  authored
  afcaa80

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• Update changloge and docs

  jfy133

  committed
  a64b001

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• Add support for contig2bin map generation immediately after binning

  jfy133

  committed
  fbbdd33

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Commits on Jan 7, 2026

• Fix grammer

  jfy133

  committed
  1bbc535

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• Better grammar

  jfy133

  committed
  9347f67

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• Merge branch 'dev' into merge-binqc-pydamage-2

  jfy133

  authored
  f9c162f

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• Update tests and improve docs

  jfy133

  committed
  87a8e1a

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• Save 'raw' files of the reordered contigs per bin

  jfy133

  committed
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Commits on Dec 8, 2025

• updated schema and enable ale in test.config

  PetcuBogdan

  committed
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Commits on Dec 6, 2025

• Merge branch 'nf-core:main' into ale_module

  PetcuBogdan

  authored
  ab6e7c8

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Commits on Dec 3, 2025

• Support assembly input + long reads

  dialvarezs

  committed
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Commits on Dec 1, 2025

• Update metromaps

  dialvarezs

  committed
  b174aa4

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Commits on Nov 28, 2025

• Fix punctuation in BIgMAG compatibility section

  jeffe107

  authored
  4806731

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