Skip to content

Fix CheckM db always being downloaded#406

Merged
jfy133 merged 2 commits intodevfrom
checkm-db-down
Mar 14, 2023
Merged

Fix CheckM db always being downloaded#406
jfy133 merged 2 commits intodevfrom
checkm-db-down

Conversation

@jfy133
Copy link
Copy Markdown
Member

@jfy133 jfy133 commented Mar 14, 2023 •
edited
Loading

Closes #405

This will likely require a patch release, it's quite bad (although I will wait for the CONCOCT ful-test debugging to finish before releasing 2.3.1)

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs- [ ] If necessary, also make a PR on the nf-core/mag branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@jfy133 jfy133 requested a review from d4straub March 14, 2023 10:45
@jfy133 jfy133 self-assigned this Mar 14, 2023
@jfy133 jfy133 requested review from prototaxites and skrakau March 14, 2023 10:46
prototaxites
prototaxites approved these changes Mar 14, 2023
View reviewed changes
Copy link
Copy Markdown
Contributor

@prototaxites prototaxites left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

LGTM!

@github-actions
Copy link
Copy Markdown

github-actions Bot commented Mar 14, 2023 •
edited
Loading

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit db9cf95

+| ✅ 156 tests passed       |+
#| ❔   1 tests were ignored |#
!| ❗   1 tests had warnings |!
Details

❗ Test warnings:

  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: lib/NfcoreTemplate.groovy

✅ Tests passed:

Run details

  • nf-core/tools version 2.7.2
  • Run at 2023-03-14 11:46:20

d4straub
d4straub approved these changes Mar 14, 2023
View reviewed changes
Copy link
Copy Markdown
Collaborator

@d4straub d4straub left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

LGTM

@jfy133 jfy133 merged commit e5149e1 into dev Mar 14, 2023
@jfy133 jfy133 deleted the checkm-db-down branch March 14, 2023 13:42
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Reviewers

@prototaxites prototaxites prototaxites approved these changes

@d4straub d4straub d4straub approved these changes

@skrakau skrakau Awaiting requested review from skrakau

Assignees

@jfy133 jfy133

Labels

None yet

Projects

None yet

Milestone

No milestone

Development

Successfully merging this pull request may close these issues.

3 participants

@jfy133 @prototaxites @d4straub