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Fix typo in parameter help text (--host_genome and --host_fasta)#426

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tillenglert merged 3 commits intonf-core:devfrom
tillenglert:docs/typo_parameters
Apr 25, 2023
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Fix typo in parameter help text (--host_genome and --host_fasta)#426
tillenglert merged 3 commits intonf-core:devfrom
tillenglert:docs/typo_parameters

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@tillenglert tillenglert commented Apr 25, 2023 •
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Switch mutually exclusiveness help text for parameters --host_genome and --host_fasta.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs- [ ] If necessary, also make a PR on the nf-core/mag branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions Bot commented Apr 25, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 6be48c1

+| ✅ 156 tests passed       |+
#| ❔   1 tests were ignored |#
!| ❗   1 tests had warnings |!
Details

❗ Test warnings:

  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: lib/NfcoreTemplate.groovy

✅ Tests passed:

Run details

  • nf-core/tools version 2.7.2
  • Run at 2023-04-25 07:56:20

@tillenglert tillenglert marked this pull request as ready for review April 25, 2023 07:55
jfy133
jfy133 approved these changes Apr 25, 2023
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Update CHANGELOG.md
64cd9ce 
Co-authored-by: James A. Fellows Yates <[email protected]>
@tillenglert tillenglert merged commit ca7408c into nf-core:dev Apr 25, 2023
@tillenglert tillenglert deleted the docs/typo_parameters branch April 25, 2023 11:17
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