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Update to new runner size syntax#910

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mashehu merged 1 commit intodevfrom
mashehu-patch-1
Nov 3, 2025
Merged

Update to new runner size syntax#910
mashehu merged 1 commit intodevfrom
mashehu-patch-1

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@mashehu mashehu commented Nov 3, 2025

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github-actions Bot commented Nov 3, 2025 •
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nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 89e6557

+| ✅ 374 tests passed       |+
#| ❔   1 tests were ignored |#
!| ❗   6 tests had warnings |!
Details

❗ Test warnings:

  • pipeline_todos - TODO string in main.nf: Remove this line if you don't need a FASTA file [TODO: try and test using for --host_fasta and --host_genome]
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in nextflow.config: Specify any additional parameters here

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: .github/PULL_REQUEST_TEMPLATE.md

✅ Tests passed:

Run details

  • nf-core/tools version 3.4.1
  • Run at 2025-11-03 15:48:54

@mashehu mashehu merged commit 46f8068 into dev Nov 3, 2025
7 checks passed
@mashehu mashehu deleted the mashehu-patch-1 branch November 3, 2025 16:00
dialvarezs added a commit that referenced this pull request Nov 7, 2025
@dialvarezs
Merge pull request #922 from dialvarezs/review-suggestions
b04a935 
Apply #910 review suggestions
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@dialvarezs dialvarezs dialvarezs approved these changes

@jfy133 jfy133 Awaiting requested review from jfy133 jfy133 is a code owner

@d4straub d4straub Awaiting requested review from d4straub d4straub is a code owner

@prototaxites prototaxites Awaiting requested review from prototaxites prototaxites is a code owner

@muabnezor muabnezor Awaiting requested review from muabnezor muabnezor is a code owner

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@mashehu @dialvarezs