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Fix when there are no too short contigs for MetaBinner#927

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d4straub merged 1 commit intonf-core:devfrom
d4straub:fix-metabinner-tooshort
Nov 12, 2025
Merged

Fix when there are no too short contigs for MetaBinner#927
d4straub merged 1 commit intonf-core:devfrom
d4straub:fix-metabinner-tooshort

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@d4straub d4straub commented Nov 12, 2025

Closes #926

Added optional output to METABINNER_BINS to succeed when no contigs are too short or unbinned.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/mag branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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Thanks!

@d4straub d4straub merged commit a9f0087 into nf-core:dev Nov 12, 2025
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@d4straub d4straub deleted the fix-metabinner-tooshort branch November 12, 2025 16:00
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2 participants