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Skip mixing of GTDB-Tk MultiQC files when binning is skipped#945

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dialvarezs merged 2 commits intonf-core:devfrom
dialvarezs:fix-gtdbtk-multiqc-skip
Nov 27, 2025
Merged

Skip mixing of GTDB-Tk MultiQC files when binning is skipped#945
dialvarezs merged 2 commits intonf-core:devfrom
dialvarezs:fix-gtdbtk-multiqc-skip

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Closes #944.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/mag branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@dialvarezs dialvarezs changed the title Skip mixing of GTDB-Tk files when binning is skipped Skip mixing of GTDB-Tk MultiQC files when binning is skipped Nov 27, 2025
@dialvarezs dialvarezs merged commit 2076b2c into nf-core:dev Nov 27, 2025
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2 participants