Fix BUSCO and TIARA report concatenation#943
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dialvarezs merged 7 commits intonf-core:devfrom Nov 28, 2025
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Not tested, but I don't see anything obvious
jfy133
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jfy133
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This was referenced Dec 1, 2025
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This PR replaces
csvtk/concatwithqsv/cat, which provides a “smart” column-aware concatenation. This allows the pipeline to concatenate CSV/TSV files with uneven columns, an issue that happens with BUSCO sometimes, as reported in #871.This PR also fixes the creation of the Tiara report channel used for concatenation, an issue we’ve seen recently and which was reported on Slack: https://nfcore.slack.com/archives/CE9MS66BS/p1764062775876329
Aside from that, includes some formatting in the
modules.configfiles (you can just ignore most of the changes there). I also added the missingmeta.ymlforbinning_metabinnerand fixed the components of other meta files.NOTE: qsv/cat module uses topics, so I removed the explicit mixing into the versions channel.
Closes #871
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).