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Update command to get python package versions in local modules#992

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dialvarezs merged 2 commits intonf-core:devfrom
dialvarezs:fix-python-pkg-versions
Mar 8, 2026
Merged

Update command to get python package versions in local modules#992
dialvarezs merged 2 commits intonf-core:devfrom
dialvarezs:fix-python-pkg-versions

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@dialvarezs dialvarezs commented Mar 7, 2026

I updated the command because current command currently fails with conda.
I also fixed the biopython version from split_fasta.
And I cleaned up empty sections from the changelog.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/mag branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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LGTM!

@dialvarezs dialvarezs merged commit 8844b51 into nf-core:dev Mar 8, 2026
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2 participants