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linting: fix incorrect unqoting of val() version numbers#4042

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mashehu merged 8 commits intonf-core:devfrom
mashehu:fix-val-quotes-in-meta-yml
Feb 12, 2026
Merged

linting: fix incorrect unqoting of val() version numbers#4042
mashehu merged 8 commits intonf-core:devfrom
mashehu:fix-val-quotes-in-meta-yml

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@mashehu mashehu commented Feb 12, 2026

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@mashehu mashehu requested a review from a team February 12, 2026 11:22
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codecov Bot commented Feb 12, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 78.40%. Comparing base (77e43b4) to head (5f8f7da).
⚠️ Report is 1 commits behind head on dev.

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Comment thread nf_core/modules/lint/meta_yml.py Outdated
Comment thread nf_core/utils.py Outdated
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LGTM

@mashehu mashehu force-pushed the fix-val-quotes-in-meta-yml branch from c43d39c to bc5e5cf Compare February 12, 2026 13:04
@mashehu mashehu force-pushed the fix-val-quotes-in-meta-yml branch from bc5e5cf to 91c8bc2 Compare February 12, 2026 14:05
@mashehu mashehu merged commit 942cf3a into nf-core:dev Feb 12, 2026
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mashehu added a commit to mashehu/tools that referenced this pull request Mar 25, 2026
)

* improve debug logging

* make sure to not unqote val entries, to avoid number-string confusion

* add test

* [automated] Update CHANGELOG.md

* Update nf_core/modules/lint/meta_yml.py

Co-authored-by: Júlia Mir Pedrol <[email protected]>

* removed unneeded try except

* update uv deps

* pin setuptools to <81 to support refgenie

---------

Co-authored-by: nf-core-bot <[email protected]>
Co-authored-by: Júlia Mir Pedrol <[email protected]>
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3 participants