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[DO NOT MERGE] test esm version of setup-nf-test [skip changelog] #4164

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[DO NOT MERGE] test esm version of setup-nf-test [skip changelog] #4164

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fda6c42
test esm version of setup-nf-test
mashehu Apr 1, 2026
ee9fc08
Apply suggestion from @mashehu
mashehu Apr 1, 2026
2478908
test esm version of setup-nf-test
mashehu Apr 1, 2026
83b5fb3
test new setup-nextflow
mashehu Apr 1, 2026
db97ee2
Merge branch 'test-setup-nf-test' of github.com:mashehu/tools into te…
mashehu Apr 1, 2026
9c66e28
Merge branch 'dev' into test-setup-nf-test
mashehu Apr 8, 2026
0461e4d
switch to master branch for setup-nextflow
mashehu Apr 8, 2026
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2 changes: 1 addition & 1 deletion .github/actions/create-lint-wf/action.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@ runs:
export NXF_WORK=$(pwd)

- name: Install Nextflow
uses: nf-core/setup-nextflow@v2
uses: nf-core/setup-nextflow@master
with:
version: ${{ matrix.NXF_VER }}

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2 changes: 1 addition & 1 deletion .github/workflows/create-test-lint-wf-template.yml
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Expand Up @@ -72,7 +72,7 @@ jobs:
run: uv sync --all-extras

- name: Install Nextflow
uses: nf-core/setup-nextflow@v2
uses: nf-core/setup-nextflow@master
with:
version: latest-everything

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2 changes: 1 addition & 1 deletion .github/workflows/create-test-wf.yml
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Expand Up @@ -58,7 +58,7 @@ jobs:
run: uv sync

- name: Install Nextflow
uses: nf-core/setup-nextflow@v2
uses: nf-core/setup-nextflow@master
with:
version: ${{ matrix.NXF_VER }}

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2 changes: 1 addition & 1 deletion .github/workflows/pytest.yml
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Expand Up @@ -92,7 +92,7 @@ jobs:
run: echo "date=$(date +'%Y-%m')" >> $GITHUB_ENV

- name: Install Nextflow
uses: nf-core/setup-nextflow@v2
uses: nf-core/setup-nextflow@master

- name: Install nf-test
uses: nf-core/setup-nf-test@ce65500579e8587607aab289ecb3a9c343c32e79 # v2
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2 changes: 1 addition & 1 deletion .github/workflows/sync.yml
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Expand Up @@ -90,7 +90,7 @@ jobs:
run: uv sync

- name: Install Nextflow
uses: nf-core/setup-nextflow@v2
uses: nf-core/setup-nextflow@master
with:
version: "latest-everything"

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2 changes: 1 addition & 1 deletion .github/workflows/update-template-snapshots.yml
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Expand Up @@ -69,7 +69,7 @@ jobs:
run: uv sync --all-extras

- name: Install Nextflow
uses: nf-core/setup-nextflow@v2
uses: nf-core/setup-nextflow@master
with:
version: latest-everything

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2 changes: 1 addition & 1 deletion nf_core/pipeline-template/.github/actions/nf-test/action.yml
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Expand Up @@ -20,7 +20,7 @@ runs:
using: "composite"
steps:
- name: Setup Nextflow
uses: nf-core/setup-nextflow@v2
uses: nf-core/setup-nextflow@master
with:
version: "{% raw %}${{ env.NXF_VERSION }}"

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2 changes: 1 addition & 1 deletion nf_core/pipeline-template/.github/workflows/download_pipeline.yml
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Expand Up @@ -39,7 +39,7 @@ jobs:
needs: configure
steps:
- name: Install Nextflow
uses: nf-core/setup-nextflow@v2
uses: nf-core/setup-nextflow@master

- name: Disk space cleanup
uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1
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2 changes: 1 addition & 1 deletion nf_core/pipeline-template/.github/workflows/linting.yml
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Expand Up @@ -23,7 +23,7 @@ jobs:
uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6

- name: Install Nextflow
uses: nf-core/setup-nextflow@v2
uses: nf-core/setup-nextflow@master

- uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6
with:
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