Skip to content

Remove deprecated cli commands and --migrate-pytest flag with all obsoleted code. #4167

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
mashehu merged 7 commits into from
Apr 14, 2026
Merged

Remove deprecated cli commands and --migrate-pytest flag with all obsoleted code. #4167

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
7 commits
Select commit Hold shift + click to select a range
7b804e6
linting: fix type error
mashehu Jun 11, 2025
803de87
Apply suggestion from @mashehu
mashehu Apr 1, 2026
6faf91d
Remove deprecated click commands
JulianFlesch Apr 1, 2026
018394e
Remove --migrate_pytest flag from cli. Remove migrate_pytest attribut…
JulianFlesch Apr 1, 2026
df6c3bd
Remove --migrate-pytest tests
JulianFlesch Apr 1, 2026
682b86e
Changelog update
JulianFlesch Apr 2, 2026
b9af28b
[automated] Update CHANGELOG.md
nf-core-bot Apr 8, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 2 additions & 0 deletions CHANGELOG.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -51,6 +51,8 @@
- Update pre-commit hook astral-sh/ruff-pre-commit to v0.15.9 ([#4152](https://github.com/nf-core/tools/pull/4152))
- Isolate test runs to avoid cross talks of Nextflow assets ([#4175](https://github.com/nf-core/tools/pull/4175))
- Update actions/github-script action to v9 ([#4182](https://github.com/nf-core/tools/pull/4182))
- Remove deprecated cli commands and --migrate-pytest flag with all obsoleted code. ([4167](https://github.com/nf-core/tools/pull/4167))
- Remove `--migrate-pytest` functionality and deprecated pipeline commands ([#4167](https://github.com/nf-core/tools/pull/4167))

### Linting

Expand Down
Loading
Loading