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1. ACDnet_RNAdot_100plex ACDnet_RNAdot_100plex Public

   An accurate segmentation of cells and RNA dot-like expression (RNAdot) is a significant challenge for the analysis of 100-plexed imaging data. We present ACDnet, an efficient and robust deep-learni…

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2. identifying_neurite_by_RRS identifying_neurite_by_RRS Public

   RRS code for automated identification of neurite growth in microfluidic device.

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3. visualizing_Tcell_response_after_HSV2_vaccine visualizing_Tcell_response_after_HSV2_vaccine Public

   To evaluate whether an immunotherapeutic vaccine could elicit tissue-based memory T cells

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4. identifying_cell_migration_by_vessel_segmentation identifying_cell_migration_by_vessel_segmentation Public

   This repository contains code for implementing vessel segmentation method initially described in the paper:

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5. infectious-pulse infectious-pulse Public

   Many-strain SIR epidemiological model

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6. stochastic-infectious-pulse stochastic-infectious-pulse Public

   Stochastic version for evolutionary insights

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