Snakemake+python workflow to highly parallelize variant calling in non-model organisms

Building runlength frequency matrices for sequence data

A WDL workflow for training run length encoding model on Nanopore data.

Litestar Fullstack Reference Application with Vue, Vite, and SQLAlchemy, Docker, Task Queues, and more!

A Snakemake storage plugin for Google Cloud Storage

Final version of MK pipeline from larger analyses in collaboration with Allison Shultz (ajshultz) & Tim Sackton (tsackton)

A Snakemake executor plugin for google lifesciences.

A Github action for running a Snakemake workflow

Snakemake executor plugin for Google Batch (under development)

Simple tool for capturing alignment regions with sufficient quality for genotyping.

The python binding for D4 format

Grammar files for the Snakemake DSL

Bioinformatics I/O libraries in Rust

nim-lang wrapper for https://github.com/38/d4-format

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing