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@bioFAM

bioFAM

Our group develops and applies computational approaches to study molecular variations and their phenotypic consequence. We are part of DKFZ and EMBL.

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  1. MOFA2 MOFA2 Public

    Multi-Omics Factor Analysis

    R 396 65

  2. MOFA MOFA Public

    Multi-Omics Factor Analysis

    R 262 70

  3. mofapy2 mofapy2 Public

    Multi-omics factor analysis v2

    Python 64 32

  4. mofax mofax Public

    Work with trained factor models in Python

    Jupyter Notebook 39 16

  5. mofaflex mofaflex Public

    factor models for omics data

    Python 37 3

  6. scDoRI scDoRI Public

    scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (eGRNs) from single-cell multiome data (RNA + ATAC).

    Python 31 7

Repositories

Showing 10 of 17 repositories
  • mofapy2 Public

    Multi-omics factor analysis v2

    bioFAM/mofapy2’s past year of commit activity
    Python 64 LGPL-3.0 32 8 0 Updated Apr 23, 2026
  • mofaflex Public

    factor models for omics data

    bioFAM/mofaflex’s past year of commit activity
    Python 37 BSD-3-Clause 3 2 1 Updated Apr 21, 2026
  • mofaflex-counselor Public

    Jupyter AI persona to help users configure MOFA-FLEX

    bioFAM/mofaflex-counselor’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Apr 20, 2026
  • mofaflex-analysis Public

    Analyses, benchmarks and tutorials related to the Prismo project

    bioFAM/mofaflex-analysis’s past year of commit activity
    Jupyter Notebook 4 0 1 0 Updated Apr 13, 2026
  • MOFA2 Public

    Multi-Omics Factor Analysis

    bioFAM/MOFA2’s past year of commit activity
    R 396 LGPL-3.0 65 65 2 Updated Feb 23, 2026
  • MOFA2_tutorials Public

    MOFA2 Tutorials

    bioFAM/MOFA2_tutorials’s past year of commit activity
    HTML 7 8 1 1 Updated Dec 19, 2025
  • scDoRI Public

    scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (eGRNs) from single-cell multiome data (RNA + ATAC).

    bioFAM/scDoRI’s past year of commit activity
    Python 31 MIT 7 5 4 Updated Aug 20, 2025
  • mofax Public

    Work with trained factor models in Python

    bioFAM/mofax’s past year of commit activity
    Jupyter Notebook 39 MIT 16 4 6 Updated Oct 22, 2024
  • cellij Public

    Implementation of a Modular Multi-Omics Factor Model Framework

    bioFAM/cellij’s past year of commit activity
    Python 5 BSD-3-Clause 0 13 3 Updated Oct 19, 2023
  • cellij-notebooks Public
    bioFAM/cellij-notebooks’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 0 0 0 Updated Sep 15, 2023
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