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Commits on Dec 1, 2025

• cleanup docs

  mikelove

  committed
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Commits on Oct 25, 2025

• docs

  mikelove

  committed
  2a88a0c

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Commits on Oct 23, 2025

• add upshot docs, fix ggplot2 aes, bump version

  mikelove

  committed
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Commits on Jul 24, 2024

• fix the usage section for DESeqDataSet

  mikelove

  committed
  c48f0bf

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Commits on Feb 1, 2024

• updating results() greaterAbs, w/ backward compat.

  mikelove

  committed
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Commits on Sep 28, 2023

• issue with collapseReplicates, fixes #86

  mikelove

  committed
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Commits on Sep 25, 2023

• results man page fix, resolves #85

  mikelove

  committed
  a24ecc0

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Commits on Jul 3, 2023

• fixing docs re dispFun setter

  mikelove

  committed
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Commits on Jun 23, 2023

• fixing dispersionFunction issue

  mikelove

  committed
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Commits on Jun 13, 2023

• added pcsToUse in plotPCA, addesses #78

  mikelove

  committed
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Commits on Jan 18, 2023

• removing geneplotter dependency

  mikelove

  committed
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Commits on Nov 9, 2022

• remove genefilter as dependency, avoid gfortran

  mikelove

  committed
  8dd1af3

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Commits on Aug 25, 2022

• update vst docs

  mikelove

  committed
  b34a0f6

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Commits on Jun 30, 2022

• fix docs, thanks igordot

  mikelove

  committed
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Commits on Jun 23, 2022

• working on tests

  mikelove

  committed
  0e96aeb

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Commits on Aug 5, 2021

• update docs re: parallel and all zero genes

  mikelove

  committed
  1a22859

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Commits on Apr 24, 2021

• attempting to fix win warning

  mikelove

  committed
  4dc6fff

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Commits on Mar 15, 2021

• turn off outlier rep for glmGamPoi

  mikelove

  committed
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Commits on Mar 7, 2021

• adding saveCols to results and lfcShrink

  mikelove

  committed
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Commits on Feb 2, 2021

• add ellipses to integrateWithSingleCell

  mikelove

  committed
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Commits on Dec 28, 2020

• Update glmGamPoi citation to published version in Bioinformatics

  const-ae

  committed
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Commits on Oct 13, 2020

• updating NEWS and small tweak to integrateWSC

  mikelove

  committed
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Commits on Sep 25, 2020

• adding Kwames integrateWithSingleCell function

  mikelove

  committed
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Commits on Aug 24, 2020

• moving minmu spec to lower funcs

  mikelove

  committed
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Commits on Aug 14, 2020

• citation for glmGamPoi

  mikelove

  committed
  7666878

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• adding switch for minmu based on fitType

  mikelove

  committed
  d3c1075

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• Merge pull request #24 from const-ae/integrate_glmGamPoi

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  mikelove

  authored
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Commits on Jul 29, 2020

• add to docs

  mikelove

  committed
  466ee23

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Commits on Jul 16, 2020

• fix

  mikelove

  committed
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Commits on Jun 8, 2020

• Update man pages

  const-ae

  committed
  e2c14d6

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Commits on May 14, 2020

• poscounts again

  mikelove

  committed
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Commits on Feb 4, 2020

• Revert "commenting out ashr for now bc removed from CRAN"

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  mikelove

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Commits on Jan 30, 2020

• commenting out ashr for now bc removed from CRAN

  mikelove

  committed
  f6778af

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Commits on Dec 8, 2019

• update docs

  mikelove

  committed
  106c190

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Commits on Dec 2, 2019

• fix link

  mikelove

  committed
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