Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dime…

Algorithmic and Utility Extensions for the Imaris Program

Aligning images acquired with the IBEX microscopy imaging technique

Python API and Jupyter widget for Vitessce

HistoQC is an open-source quality control tool for digital pathology slides

A Python package for tissue and pen marking segmentation on low-magnification (1.25x) whole slide images.

WebGL-based viewer for volumetric data

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

Workflows related to project previously referred to as "Hedwig"

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

Prefect is a workflow orchestration framework for building resilient data pipelines in Python.

Medical imaging processing for AI applications.

IEEE ISBI 2020 SimpleITK Tutorial

Official AFNI source and documentation

Python library for reading and writing image data

JACS Configuration Management

ThrustCurve.org third revision

MESS reports web site

Vagrant boxes to set up virtual machines to build SimpleITK

Provides the GitHub pull request status link to the CDash dashboard for the pull request's builds.

An ITK Module with a collection of additional filters for SimpleITK