Custom source code, workflows and jupyter notebooks used in the analysis of the wheat genotypes sequenced in the Whealbi Project
- Raw Data Processing and Variant Calling
- Genome-Wide Association Study (Figure 1)
- Geographical component of the panel structure (Figure 2A)
- Components of the panel structure (Figure 2B)
- Computation of nucleotide diversity π (Figure 3)
- Studying the Phylogeny and Reticulate Evolution of the Wheat Species Complex using Repeated Random Haplotype Sampling (RRHS; Figure 4)
- Inference of Hybridization and Introgression Events using ABBA-BABA (Figure 4B)