Stars
The all-in-one AI productivity accelerator. On device and privacy first with no annoying setup or configuration.
Hundreds of models & providers. One command to find what runs on your hardware.
Pipeline to design taxon-specific primes in defined bacterial communities.
The agent harness performance optimization system. Skills, instincts, memory, security, and research-first development for Claude Code, Codex, Opencode, Cursor and beyond.
A single CLAUDE.md file to improve Claude Code behavior, derived from Andrej Karpathy's observations on LLM coding pitfalls.
A lightweight alternative to OpenClaw that runs in containers for security. Connects to WhatsApp, Telegram, Slack, Discord, Gmail and other messaging apps,, has memory, scheduled jobs, and runs dir…
A simplified version of Dorado built on top of S/BLOW5 format.
an open source, extensible AI agent that goes beyond code suggestions - install, execute, edit, and test with any LLM
Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biotoul.fr/)
Python pipeline for automated synteny block detection and visualization from multiple genomes.
Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains
A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.
A collection of the FMH hashes for every microbial database I can get my hands on
Leveraging Language Models for Analysis of Metagenomic Sequencing Data
TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various us…
MetaflowX: A Scalable and Resource-Efficient Workflow for Multi-Strategy Metagenomic Analysis
Intelligent automation and multi-agent orchestration for Claude Code
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
There can be more than Notion and Miro. AFFiNE(pronounced [ə‘fain]) is a next-gen knowledge base that brings planning, sorting and creating all together. Privacy first, open-source, customizable an…
Donetick an open-source, user-friendly app for managing tasks and chores, featuring customizable options to help you and others stay organized
A tutorial-scale, fully local RAG-based chatbot built with Gemma 3 via Ollama + Bright Data SERP API + Chroma. This researches topics comprehensively and then answers questions using retrieval-augm…
A bioinformatics tool for working with modified bases
A self-hosted, Markdown file based task management board