WebGL-based viewer for volumetric data

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

Visualization of biobank-scale genomic datasets.

BioData Catalyst Harmonized Model

Transform your favorite cities into beautiful, minimalist designs. MapToPoster lets you create and export visually striking map posters with code.

Run geogram on Linux, Android, Windows, OSX, iOS and Web

A sunburst interactive chart web component for visualizing hierarchical data

disk usage visualizer

This is the alpha version of the CellOracle package

Gene-Term Enrichment Analysis (GeneTEA)

Mondo Disease Ontology

Embeddable Postgres with real-time, reactive bindings.

Distributed single-cell data analysis.

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

This repository contains the different resources derived or generated using ComPath

AutDB: A Privacy-First Cross-Dataset Baseline for Autism Spectrum Disorder Movement Analysis using MMASD and Engagnition

Run llama.cpp in a GPU accelerated Docker container

Up to 100x faster strings for C, C++, CUDA, Python, Rust, Swift, JS, & Go, leveraging NEON, AVX2, AVX-512, SVE, GPGPU, & SWAR to accelerate search, hashing, sorting, edit distances, sketches, and m…

AgeLapse automatically aligns face pictures and creates stabilized aging time-lapses, i.e. "photo-a-day" videos.

BroadHacks Project, Zero-shot evaluation of Pathology FM at expression prediction task

Goal: To improve the prediction of small molecule bioactivity (IC50) by augmenting traditional descriptor-based QSAR models with embeddings generated from experimental metadata.

Automatic Lab Notebook (ALN) generates summaries of Jupyter Notebook changes on each commit. Designed to improve research reproducibility, documentation, and collaboration with minimal manual effort.