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Python 2 Updated Jan 26, 2026

Gene prediction software

C 70 17 Updated Oct 22, 2022

JavaScript Reverse Tools -- JS逆向工具

JavaScript 1,709 261 Updated Apr 26, 2026

Genotype/Haplotype SNP caller

C++ 2 Updated Aug 7, 2015

Pooled Sequencing Analysis for Sex Signal

C 15 6 Updated Sep 14, 2021

Pangenome explorations

Jupyter Notebook 13 Updated Apr 8, 2026

List of genome assembly tools

Python 95 10 Updated Apr 20, 2026

Generate alternative long reads with the help of target`s assemblies, target`s PacBio HiFi reads and reference genome.

Shell 20 3 Updated Mar 25, 2026

CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies

Python 25 5 Updated Apr 13, 2020

Some commonly used research experiences and processes are encapsulated into Agent skills.

TypeScript 544 72 Updated Apr 24, 2026

A tool for evaluating long-read de novo assembly results

Python 53 17 Updated Aug 25, 2024

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

C++ 513 137 Updated Feb 26, 2026

LoFreq Star: Sensitive variant calling from sequencing data

C 113 36 Updated Oct 16, 2025

Create anatograms using ggplot2

R 404 53 Updated Aug 7, 2025

Split sequences of allopolyploids into their subgenomes

1 Updated Oct 16, 2025

QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics

Perl 24 1 Updated Apr 28, 2026

"DeepTutor: Agent-Native Personalized Learning Assistant"

Python 22,721 3,035 Updated Apr 30, 2026

Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads

Python 8 2 Updated Nov 30, 2018

deMEM: a novel divide-and-conquer framework based on de Bruijn graph for scalable multiple sequence alignment

C++ 2 Updated Jan 13, 2026

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

Python 271 75 Updated Jul 17, 2025

Ultra-fast preprocessing and quality control for long-read sequencing data

C++ 228 15 Updated Sep 6, 2025

PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous genomes

Shell 13 3 Updated Sep 25, 2025

Construct the ancestral genome from the given populations.

Python 7 1 Updated Jan 18, 2025

A next.js web application that integrates AI capabilities with draw.io diagrams. This app allows you to create, modify, and enhance diagrams through natural language commands and AI-assisted visual…

TypeScript 28,300 2,981 Updated Apr 29, 2026

🤖Automated node IP risk checking and tagging tool for Clash (适用于 Clash 代理的自动化节点 IP 风险检查并重命名标记工具)

Python 1,013 67 Updated Jan 30, 2026

Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

Python 39 7 Updated Apr 30, 2026

一键将 Markdown 和网页 AI 对话(ChatGPT/DeepSeek等)完美粘贴到 Word、WPS 和 Excel 的效率工具 | One-click paste Markdown and AI responses (ChatGPT/DeepSeek) into Word, WPS, and Excel perfectly.

Python 4,725 288 Updated Apr 29, 2026

A grammar of graphics for comparative genomics

R 761 69 Updated Feb 23, 2026

Sampling and inference of genealogies with recombination

C++ 56 13 Updated Apr 10, 2026
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