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Starred repositories
SmoothCSV is a powerful and intuitive tool for editing CSV files.
Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneity. Pairtree focuses on scaling to many more cancer samples a…
GitHub Action to setup Developer Command Prompt for Microsoft Visual C++
Probabilistic model for inferring clonal population structure from deep NGS sequencing.
Accurate Bayesian reconstruction of cancer phylogenies from bulk sequencing.
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the …
RGenomicsETL / duckhts
Forked from duckdb/extension-template-c'htslib' based 'Duckdb' Extenstion for High Throughput Sequencing File Formats
CommonMark parsing and rendering library and program in C
Hundreds of models & providers. One command to find what runs on your hardware.
Jupyter extensions that help you write code faster: Context aware AI Chat, Autocomplete, and Spreadsheet
Interactive TUI for bulk managing dependency PRs. Multi-repo support, keyboard navigation, live settings. A better Dependabot/Renovate workflow.
MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation
Powerful system-level package manager for Linux, macOS and Windows written in Rust – building on top of the Conda ecosystem.
Protobuf and gRPC specifications for the MinKNOW API