Starred repositories
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
scanRBP loads RNA-protein binding motif PWM and computes the log-odds scores for all the loaded RBPs across a given genomic sequence + draws a heatmap of the scores.
Typst MCP Server is an MCP (Model Context Protocol) implementation that helps AI models interact with Typst, a markup-based typesetting system. The server provides tools for converting between LaTe…
Pipeline for downloading fastq files from the SRA database
A markup-based typesetting system that is powerful and easy to learn.
Evaluate CLIP-seq and other genomic region data using a comprehensive collection of known RBP binding motifs
Agent-native knowledge engine with MCP tools for document indexing, wiki organization, fast retrieval and deep reading across PDF/DOCX/PPTX/Markdown
Semi-automated research assistant for academic research and software development. Supports Claude Code, OpenCode, and Codex CLI across ideation, coding, experiments, writing, and publication.
Turn AI subscriptions into standard API endpoints. OpenAI & Anthropic compatible gateway — for Amp Code, Cursor, Factory CLI, and more.
AI-powered IDE for bioinformatics — built by biologists, for biologists
A Comprehensive Toolkit for High-Quality PDF Content Extraction
[WIP / experiment] Living literature review of resistance to immune checkpoint inhibitors
Exploring pairs of inverted repeat elements across the human genome in mediating a novel stem-loop structure exon skipping mechanism
The open agent skills tool - npx skills
Audit OpenEvidence MCP citations with parallel PubMed verification and structured accuracy scoring. Install: npx skills add htlin222/audit-oe-skill
AI-Powered Bioinformatics Research Assistant. Built on OpenClaw.
LLM-powered personalized daily lists of scientific papers
MCP server for bioinformatics agent skills — query a knowledge graph of 78 bioinformatics workflows directly from Claude Code
Statistical correctness benchmarks for the RConsortium pharma-skills group-sequential-design AI skill. Five silent-failure test cases targeting NPH detection, competing risks, enrollment modeling, …
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Updated Apr 23, 2026