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  • FGCZ - ETHZ and UZH
  • Zurich Switzerland

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@kirchnerlab @findMF @protViz @SysteMHC

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Ruby 7 1 Updated Apr 29, 2026

Memory engine and app that is extremely fast, scalable. The Memory API for the AI era.

TypeScript 22,315 2,043 Updated Apr 29, 2026

Autonomous multi-session AI coding

TypeScript 14,106 1,915 Updated Mar 23, 2026

DeepAnalyze is the first agentic LLM for autonomous data science. 🎈你的AI数据分析师,自动分析大量数据,一键生成专业分析报告!

Python 4,094 670 Updated Apr 13, 2026

ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to allow a continuous, easy, and controlled comparison of prot…

Python 52 23 Updated Apr 29, 2026

A Grammar of Graphics for Python

Python 4,557 246 Updated Apr 19, 2026

Generating Dynamic DEA Reports with the prolfqua R Package

R 6 5 Updated Apr 29, 2026

This is the development home of the workflow management system Snakemake. For general information, see

Python 2,765 637 Updated Apr 27, 2026

The Julia Programming Language

Julia 48,641 5,765 Updated Apr 29, 2026

CLI toolkit for fast analysis of DIA proteomics experiments and in silico library prediction

Julia 21 4 Updated Apr 29, 2026

HUPO-PSI Standardized peptidoform notation

Rust 24 5 Updated Apr 2, 2026

Proteomics analysis workflows

R 10 1 Updated Mar 22, 2026

Fast and accurate label-free quantification for small and very large numbers of proteomes

Jupyter Notebook 61 7 Updated Mar 19, 2026

Rescoring and spectral library generation pipeline for proteomics.

Python 55 12 Updated Apr 27, 2026

Determine minimal Protein set given list of peptide protein mappings and various weighting functions

R 6 2 Updated Oct 23, 2025

Scalable and self-optimizing processing workflow for untargeted LC-MS

R 33 3 Updated Aug 3, 2024

Differential Expression Analysis tool box R lang package for omics data

R 46 10 Updated Apr 17, 2026

Patpat: A Python-based framework for searching public proteomics datasets

Python 6 2 Updated Mar 29, 2025

Load mass spectrometry mzXML files

Julia 18 6 Updated Jul 14, 2022

Benchmarking label-free quantification (LFQ) in bottom-up proteomics by DIA LC-MS and DIA-NN

R 6 Updated Feb 17, 2024

amica: an interactive and user-friendly web-based platform for the analysis of proteomics data

R 27 8 Updated Mar 30, 2026

API and commad line tools for b-fabric

Python 6 2 Updated Apr 27, 2026

DIA-NN - a universal automated software suite for DIA proteomics data analysis.

C++ 443 75 Updated Apr 12, 2026

A high-performance implementation of the R programming language, built on GraalVM.

Java 645 63 Updated Jun 6, 2025

Companion webpage to the book "Mathematics For Machine Learning"

Jupyter Notebook 15,427 2,774 Updated Mar 13, 2025

Bayesian Data Analysis demos for R

HTML 593 209 Updated Sep 12, 2025

Bayesian Data Analysis course at Aalto

TeX 2,268 566 Updated Jan 8, 2026

Data from BAG Tweets made useful.

Python 283 73 Updated Nov 3, 2025

COVID-19 Italia - Monitoraggio situazione

3,804 2,184 Updated Jan 10, 2025

running ora or gsea on lists of proteinidentifiers

R 1 1 Updated Nov 11, 2025
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